PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G243600.1
Common NameB456_008G243600, LOC105765188
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 250aa    MW: 27897.4 Da    PI: 6.943
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G243600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.6e-1768118155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + ++GVr++  + +Wv+e+r+p   +k++r++lg++ t+e+Aa+a++ a+++++g
  Gorai.008G243600.1  68 PVFRGVRRRN-NDKWVCELREP---NKKTRIWLGTYPTPEMAARAHDVAALAFRG 118
                         579****887.8*********8...347************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1268118IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2169128IPR016177DNA-binding domain
PROSITE profilePS5103221.53569126IPR001471AP2/ERF domain
SMARTSM003801.9E-2769132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-3069128IPR001471AP2/ERF domain
PRINTSPR003679.5E-77081IPR001471AP2/ERF domain
CDDcd000182.07E-2870128No hitNo description
PRINTSPR003679.5E-792108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDIPSQTSDV PFSKSYSMRA ERVEPSSSSE GGIGGQRAVH SDEEVLLLAT NRPKKRAGRR  60
VFKETRHPVF RGVRRRNNDK WVCELREPNK KTRIWLGTYP TPEMAARAHD VAALAFRGKA  120
ACLNFADSVW RLPVPASNDA ADIRRAAAEA AEAFRPQVFQ ELSGSDVRQG SFKASDCEVS  180
SSDVKLENKK KMAAEGEVST EKIHFMDEEE MFYMPKLLDS MAEALLLSPP RNRDEADSDI  240
DVSLWSYSI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00001PBMTransfer from 471409Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR2332530.0KR233253.1 Gossypium barbadense C-repeat binding factor 4-like protein (CBF4L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439611.10.0PREDICTED: dehydration-responsive element-binding protein 1B-like
SwissprotP938351e-63DRE1B_ARATH; Dehydration-responsive element-binding protein 1B
TrEMBLA0A0D2TC050.0A0A0D2TC05_G
STRINGPOPTR_0001s08720.13e-80(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.13e-61C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]